The ruling Communist Party of India (Marxist) is trailing behind with a 17 seat-lead in the state.
While Nagaland has become a neck and neck battleground between the BJP- Nationalist Democratic Progressive Party (NDPP) alliance and Naga Peoples Front (NPF), Meghalaya is seeing Congress in the lead.
In Nagaland, both the BJP-NDPP alliance and the NPF have registered a lead on 16 seats each.
Meanwhile in Meghalaya, Congress is struggling to retain its majority by taking a lead on 21 seats, as the National People's Party (NPP) is closely following with a lead on 18 seats.
Tripura went to polls on February 18, while voting in Meghalaya and Nagaland took place on February 27.